Quick NGS All-in-one data processing for Next-Generation Sequencing

Introduction to QuickNGS


Next-Generation Sequencing has set new standards in the depth and accuracy of molecular genetic analyses. Due to reduced processing time and cost, it has become an increasingly popular tool in life sciences and the amounts of data produced are growing bigger and bigger. This tremendous challenge in the field of data analysis has posed the need for standardized workflows which optimally use the computing and human resources.

QuickNGS is a production environment for quick batch-wise analysis of Next-Generation Sequencing (NGS) data in high-throughput laboratories. The core of the system is formed by a MySQL database containing all experimental data and meta data that are required to do the analysis. The software uses this information to control the overall workflow at a maximized degree of automation.


Next topic: Setting up the server environment

 

 

 

 

 

 

News

June 6th, 2017: Our paper on the cancer genome analysis platform QuickNGS Cancer has been published in Human Mutation.

September 30th, 2016: Please access the 'Multi-Layer Integration' area to combine RNA-Seq and ChIP-Seq data with an early release of our new multi-OMICS data integration platform.

June 23rd, 2016: Tools for gene set enrichment analysis using GO terms and KEGG pathways have been adopted into QuickNGS from version 1.2.2 on.

February 15th, 2016: The latest QuickNGS release now includes QuickNGS Cancer, a new platform specifically designed for cancer genome analysis.

January 4th, 2016: Bluebee High-Performance Genomics B.V., Delft, The Netherlands, have adopted QuickNGS into their cloud-based NGS analysis solution.

September 23rd, 2015: Please refer to our new FAQ to handle common problems with the QuickNGS results.

July 31th, 2015: The QuickNGS paper was published in BMC Genomics! Please cite this paper for all analyses based on the QuickNGS system.

July 11th, 2014: The first public version of the QuickNGS source code has just been released! Please click here to download the software.